miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|229575732|gb|GO657721.1|GO657721 CAGGCAGTCGGCCAGGCCACCTTGTTGATGAAAGAGCGCTTTACGCAGTTCAGCGGTCTGGTGGACGACTGCGACCTGGG
CCGAGGGGAGAGGATCATCACCTGCACGGACCTGCAGGGATTTTGGGACATGGTGTATTACCAGGTAGAGGATGTCCACA
AGAAATTTAACACTCTGAAAGAAGCAGAGAGCCGGGGCTGGGTGGAGGAGCACAAGCCCCCACCACCGCGACAGAGGAAA
GGCGTGAAGAAACAATCAGCTGCACCTGCCAAGCCAACAGGAACTAAAGTGGCAGCCAAGTCTCGCCTAGCTGCTGTGAA
AGCGGCCATGAAAGCCAGACAGCAGGCAGAGAACGCAGCAAAGGAGGCTGGAAACGATCAAGCAGAGCCCCAACCCACTG
ACGCCGTGGTCTTTGACGGAGGCTTCTTCCAGGTGGAGAGCCCAGCCAGACCATCAGTCGTGTCTGTAGGTTCCGCGAGG
AGATCCAGCCGTCGGAGTGCTGCGGTGTTGCCCCAGGCCTCTCCCTGCTCCAGCTACCTCTCTCCTAGAAGAGTCAGTCG
GCGATCCCTTGCACTGGCACAGGTTCCCCTTCACGCCGTCGCCTCTCCTGCTCAGCCCGTCCACACTCCTGCCCACATCA
GTCGTGCCCTCAACCGAACCCCAGCACAAACGCCCAAGTCTCAGCGTGGCACTCCTCAGTCATCCCAGAAGAGAAAAGAC
CCCGTCAATGTCTCCCTTTGTTTCTCACCTGTCAAGGAAGCG




Most similar to sp|Q8K4R9|DLGP5_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8K4R9|DLGP5_MOUSE Disks large-associated protein 5 OS=Mus
           musculus GN=Dlgap5 PE=1 SV=2
          Length = 808

 Score =  110 bits (274), Expect = 1e-23
 Identities = 61/145 (42%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
 Frame = +1

Query: 7   VGQATLLMKERFTQFSGLVDDCDLGRGERIITCTDLQGFWDMVYYQVEDVHKKFNTLKEA 186
           VGQ  LL+KERF QF GLVD+C+  RGE+  TCTDL GFWDMV +QV+DV++KFN L + 
Sbjct: 455 VGQTRLLIKERFRQFEGLVDNCEYKRGEKETTCTDLDGFWDMVSFQVDDVNQKFNNLIKL 514

Query: 187 ESRGWVEEHKPPPPRQRKGVKKQSAAPAKPTGT-XXXXXXXXXXXXXXMKARQQAENAAK 363
           E+ GW + + P     RK +     + AK                   MK R Q E  A 
Sbjct: 515 EASGWKDSNNPSKKVLRKKIVPGRTSKAKQDDDGRAAARSRLAAIKNAMKGRPQQEVQAH 574

Query: 364 EAGNDQAEPQPTDAVVFDGGFFQVE 438
            A  +    +  D +VFD GFF++E
Sbjct: 575 AAAPETT--KEVDKIVFDAGFFRIE 597